IGVFFI1146PULR

released
validated
1{
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9    "accession": "IGVFFI1146PULR",
10    "aliases": [
11        "buenrostro-bernstein:surya-mouse-colitis-organoid-atac-frag"
12    ],
13    "analysis_step_version": "/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011986/",
20        "component": "mapping"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v17",
24    "content_md5sum": "012b0ecdf047323475b2f101ebb4603c",
25    "content_type": "fragments",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-06T16:38:48.968772+00:00",
28    "derived_from": [
29        "/sequence-files/IGVFFI6167AJYF/",
30        "/sequence-files/IGVFFI8873ROJR/",
31        "/sequence-files/IGVFFI2165FXVU/",
32        "/sequence-files/IGVFFI8206VEGU/",
33        "/sequence-files/IGVFFI8793QBEK/",
34        "/sequence-files/IGVFFI5527SVWF/",
35        "/sequence-files/IGVFFI8910YNPE/",
36        "/sequence-files/IGVFFI9265HLQG/"
37    ],
38    "file_format": "tsv",
39    "file_format_specifications": [
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50        "file_set_type": "intermediate analysis",
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53                "@id": "/in-vitro-systems/IGVFSM4239FRER/",
54                "@type": [
55                    "InVitroSystem",
56                    "Biosample",
57                    "Sample",
58                    "Item"
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60                "accession": "IGVFSM4239FRER",
61                "classifications": [
62                    "organoid"
63                ],
64                "sample_terms": [
65                    {
66                        "@id": "/sample-terms/UBERON_0000397/",
67                        "status": "released",
68                        "term_name": "colonic epithelium"
69                    }
70                ],
71                "status": "released",
72                "summary": "Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days",
73                "targeted_sample_term": {
74                    "@id": "/sample-terms/UBERON_0001155/",
75                    "status": "released",
76                    "term_name": "colon"
77                },
78                "taxa": "Mus musculus"
79            }
80        ],
81        "status": "released",
82        "summary": "SHARE-seq: fragments, sparse gene count matrix"
83    },
84    "file_size": 2266989120,
85    "gene_list_for": [],
86    "href": "/tabular-files/IGVFFI1146PULR/@@download/IGVFFI1146PULR.tsv.gz",
87    "input_file_for": [],
88    "integrated_in": [],
89    "lab": {
90        "@id": "/labs/jason-buenrostro/",
91        "title": "Jason Buenrostro, Broad"
92    },
93    "loci_list_for": [],
94    "md5sum": "0350fc7e6f4260b8f617fade5fb14ba0",
95    "quality_metrics": [],
96    "release_timestamp": "2025-03-26T19:25:49.442926+00:00",
97    "s3_uri": "s3://igvf-files/2025/03/06/830bc92c-39be-48de-989f-7a88413ac9e8/IGVFFI1146PULR.tsv.gz",
98    "schema_version": "15",
99    "status": "released",
100    "submitted_by": {
101        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
102        "title": "Siddarth Wekhande"
103    },
104    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_organoids.fragments.tsv.gz",
105    "summary": "fragments",
106    "upload_status": "validated",
107    "uuid": "830bc92c-39be-48de-989f-7a88413ac9e8",
108    "workflow": {
109        "@id": "/workflows/IGVFWF0507XZOR/",
110        "name": "SHARE-seq-alignmentV2",
111        "uniform_pipeline": false
112    }
113}