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"Proliferation CRISPR screen",
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],
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{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI1080RSSU](/tabular-files/IGVFFI1080RSSU/) has in progress subobject document [740d7be8-a866-49e3-8ff1-275421368464](/documents/740d7be8-a866-49e3-8ff1-275421368464/).",
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{
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],
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{
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
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}
],
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"taxa": "Homo sapiens"
},
{
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
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}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"taxa": "Homo sapiens"
},
{
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
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}
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"taxa": "Homo sapiens"
},
{
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
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"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"taxa": "Homo sapiens"
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{
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}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6696FEKN/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
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"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3606MSCF/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8877VFZU/",
"accession": "IGVFSM8877VFZU",
"classifications": [
"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2884OLDB/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6092XWKO/",
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"cell line"
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
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"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0714DAUG/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
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{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
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"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
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"cell line"
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7802HOVQ/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9852XOOJ/",
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"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4140ONXW/",
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"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0766KHLE/",
"accession": "IGVFSM0766KHLE",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2395HZJN/",
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"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0340TUAL/",
"accession": "IGVFSM0340TUAL",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8265LJQT/",
"accession": "IGVFSM8265LJQT",
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"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7144FDQS/",
"accession": "IGVFSM7144FDQS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9081MWUS/",
"accession": "IGVFSM9081MWUS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1726EBEW/",
"accession": "IGVFSM1726EBEW",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0866KWRP/",
"accession": "IGVFSM0866KWRP",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0037PWFA/",
"accession": "IGVFSM0037PWFA",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5162TJUW/",
"accession": "IGVFSM5162TJUW",
"classifications": [
"cell line"
],
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{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1381LSPK/",
"accession": "IGVFSM1381LSPK",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9177FKXG/",
"accession": "IGVFSM9177FKXG",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6414TXBV/",
"accession": "IGVFSM6414TXBV",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0108TODH/",
"accession": "IGVFSM0108TODH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5246XKEH/",
"accession": "IGVFSM5246XKEH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1322POFE/",
"accession": "IGVFSM1322POFE",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "CRISPR interference FlowFISH screen, Proliferation CRISPR interference screen targeting NFKBIA: guide quantifications"
},
"file_size": 132488,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI1080RSSU/@@download/IGVFFI1080RSSU.csv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/guillaume-lettre/",
"title": "Guillaume Lettre, MHI"
},
"loci_list_for": [],
"md5sum": "c3c2136c662d4b7b1ee9a1eb8fa47fce",
"quality_metrics": [],
"release_timestamp": "2025-03-07T23:05:43.711250+00:00",
"s3_uri": "s3://igvf-files/2024/11/20/a805cfcd-9230-44e4-aca3-65e8563a2c92/IGVFFI1080RSSU.csv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/005a9a1c-02ab-408f-90a9-d6bea5c36d05/",
"title": "Ken Sin Lo"
},
"submitted_file_name": "/home/lokensin/projects/rrg-glettre/lokensin/IGVF/Submission_DACC_20241113/BP_Pilot_KRAB_Flowfish_Mageck_results.csv.gz",
"summary": "guide quantifications",
"upload_status": "validated",
"uuid": "a805cfcd-9230-44e4-aca3-65e8563a2c92",
"workflow": {
"@id": "/workflows/IGVFWF7224ABWD/",
"name": "MAGeCK CRISPR screen workflow",
"uniform_pipeline": false
}
}