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IGVFFI1063ULFW

released
validation exempted
File Set
IGVFDS9825AFPQ(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf16_peaks_10x3
md5sum
2a9f02ebc7a2502ab31abfd23852821b
Content MD5sum
a3be286847291fd379e119d72b392d5e
File Size
2.9 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l3_peaks.bed.gz
Checkfiles Version
v14
Validation Error Detail
{"validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/02/14/a9b45864-91dc-4236-8de8-644cc948a0fe/IGVFFI1063ULFW.bed.gz, line=348213]: chrom KI270728.1 not found [KI270728.1\t232279\t233176]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.8 GB
validation exempted