IGVFFI0965SWBT

released
validation exempted
File Set
IGVFDS2269RNLP(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf9_fragments_10x3
md5sum
54eca60afa8bd4a9143c837b3aeaf060
Content MD5sum
25da1fa4d15100c320b53c25eb8d06f4
File Size
6.6 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l3_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files This File Derives From

12 items
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI0965SWBT
Ansuman Satpathy, Stanford
1.7 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.6 MB
validation exempted

Attribution