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IGVFFI0855DXJQ

released
validated
File Set
IGVFDS0237MRDL(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix)
Summary
fragments
Analysis Step Version
/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/
File Format
tsv
Content Type
fragments
Aliases
buenrostro-bernstein:surya-mouse-colitis-tissue-atac-frag
md5sum
d9d326068c7df2842e76bf7f66d275f5
Content MD5sum
329d7e5871c75814013dd46d2896b894
File Size
4.9 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_colitis_tissue.ATAC.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Specification of fragment file generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

5 items
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell

Files This File Derives From

24 items
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
5.0 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.8 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.0 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.9 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
9.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
4.1 GB
validated