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IGVFFI0855DXJQ
IGVFFI0855DXJQ
released
validated
Json view
File Set
IGVFDS0237MRDL
(SHARE-seq: fragments, sparse gene count matrix)
Summary
fragments
Analysis Step Version
/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/
File Format
tsv
Content Type
fragments
Aliases
buenrostro-bernstein:surya-mouse-colitis-tissue-atac-frag
md5sum
d9d326068c7df2842e76bf7f66d275f5
Content MD5sum
329d7e5871c75814013dd46d2896b894
File Size
4.9 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_colitis_tissue.ATAC.fragments.tsv.gz
Checkfiles Version
v20
File Format Specifications
1 item
Page
Description
Type
Download
Preview
Specification of fragment file generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification
masai-shareseq-v2-fragment-file-spec.pdf
Download masai-shareseq-v2-fragment-file-spec.pdf
Download masai-shareseq-v2-fragment-file-spec.pdf
Samples
5 items
Accession
Type
Sample Terms
Summary
IGVFSM0332KRWE
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM1242TZJM
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM4720VFLQ
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM7017UXAA
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Files This File Derives From
24 items
1
2
3
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI0054RGNX
IGVFDS0463BASV
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
IGVFFI0162FERT
IGVFDS3212RENM
fastq
reads
Jason Buenrostro, Broad
5.0 GB
validated
IGVFFI0336RPVF
IGVFDS7425QRXB
fastq
reads
Jason Buenrostro, Broad
1.8 GB
validated
IGVFFI0623ATSQ
IGVFDS6298OKGJ
fastq
reads
Jason Buenrostro, Broad
2.0 GB
validated
IGVFFI0866MYPP
IGVFDS7425QRXB
fastq
reads
Jason Buenrostro, Broad
1.9 GB
validated
IGVFFI1018OOCL
IGVFDS0463BASV
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
IGVFFI1118JKQS
IGVFDS9711DZFS
fastq
reads
Jason Buenrostro, Broad
2.4 GB
validated
IGVFFI1625RYZQ
IGVFDS9364TNAM
fastq
reads
Jason Buenrostro, Broad
3.4 GB
validated
IGVFFI1732SLOD
IGVFDS9896MQFE
fastq
reads
Jason Buenrostro, Broad
9.4 GB
validated
IGVFFI2327DFZG
IGVFDS1680VACI
fastq
reads
Jason Buenrostro, Broad
4.1 GB
validated
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad