IGVFFI0802WGXH

released

validation exempted

File Set

IGVFDS0398ALPE(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf17_peaks_10x5

md5sum

3caef66e6ea18c0ca877225e9c0da564

Content MD5sum

ce24ca3219a9e3b010601b099eae7131

File Size

3.1 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l5_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum ce24ca3219a9e3b010601b099eae7131 does not match newly calculated md5sum 3caef66e6ea18c0ca877225e9c0da564.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/0f48ff99-c956-43ed-80a1-0cd9e2fc5761/IGVFFI0802WGXH.bed.gz, line=377346]: chrom KI270727.1 not found [KI270727.1\t52074\t52957]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

5 items

Sample Terms

Disease Terms

Summary

IGVFSM0198VBOA

MultiplexedSample

RUES2

multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

MultiplexedSample

MultiplexedSample

MultiplexedSample

MultiplexedSample