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IGVFFI0792VPBJ

released
validation exempted
File Set
IGVFDS5400TMWO(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter variants
Analysis Step Version
/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/
File Format
tsv
Content Type
reporter variants
Aliases
tim-reddy:starr-seq-bird-input-file-P006
md5sum
9c520f1d9c9bdf37dbbc9ed9a358bba7
Content MD5sum
6fd6b5da34d1e07a312570e4db2e69a4
File Size
32 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool6.txt.gz
Checkfiles Version
v16
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD input file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
bam
alignments
Tim Reddy, Duke
6.7 GB
validated
bam
alignments
Tim Reddy, Duke
8.5 GB
validated

Files Derived From This File

2 items
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
164 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
75 MB
validated