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IGVFFI0753YWZB

released
validated
File Set
IGVFDS2240UYEO(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS2240UYEO_fragments
md5sum
b5d1d89d8e49a67ceef91eb7a9beed01
Content MD5sum
c2d23c255fb024cdb7deb51601e18e56
File Size
1.7 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/053cebc3-3088-4281-87d1-65fca1fcb4ea/call-atac/wf_atac/eaafe4ff-d5c2-4579-abed-2218150ac698/call-generate_fragments/SS-PKR-434.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)

Files This File Derives From

15 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
7.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
8.9 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
10 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI0753YWZB
Jason Buenrostro, Broad
942 KB
validated