IGVFFI0707ZMKE

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI0707ZMKE/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0707ZMKE",
    "aliases": [
        "ansuman-satpathy:igvf17_multiseq_count_matrix_10x3"
    ],
    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v16",
    "content_md5sum": "7976b05f16eb479fb2854bec0c57d9dd",
    "content_type": "cell hashing barcodes",
    "controlled_access": false,
    "creation_timestamp": "2025-02-19T23:36:31.259372+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI2541DVGK/",
        "/sequence-files/IGVFFI3633NOEG/",
        "/sequence-files/IGVFFI0249UVTL/",
        "/sequence-files/IGVFFI7267SMPA/",
        "/sequence-files/IGVFFI9313JLBH/",
        "/sequence-files/IGVFFI2048VLVQ/",
        "/sequence-files/IGVFFI2405TTKO/",
        "/sequence-files/IGVFFI1501KDHP/",
        "/sequence-files/IGVFFI5273UNHO/",
        "/sequence-files/IGVFFI3961CXUE/",
        "/sequence-files/IGVFFI8348XCMK/",
        "/sequence-files/IGVFFI3519WRHY/",
        "/sequence-files/IGVFFI2348WKKG/",
        "/sequence-files/IGVFFI1189PCMA/",
        "/sequence-files/IGVFFI1037KXKV/",
        "/sequence-files/IGVFFI0907BIYM/"
    ],
    "file_format": "tsv",
    "file_format_specifications": [
        "/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS0398ALPE/",
        "accession": "IGVFDS0398ALPE",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM6345RLEH/",
                "accession": "IGVFSM6345RLEH",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM9149ZACE/",
                "accession": "IGVFSM9149ZACE",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM8270UYGU/",
                "accession": "IGVFSM8270UYGU",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM7909ETQJ/",
                "accession": "IGVFSM7909ETQJ",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM0198VBOA/",
                "accession": "IGVFSM0198VBOA",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 621815,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI0707ZMKE/@@download/IGVFFI0707ZMKE.tsv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "b0cd7b63fc16a8bbbae6f60517d38e5b",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T06:05:27.180628+00:00",
    "s3_uri": "s3://igvf-files/2025/02/19/285d0cac-2db9-4c1c-b135-db33109a187b/IGVFFI0707ZMKE.tsv.gz",
    "schema_version": "13",
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e17l3_tag_mtx.tsv.gz",
    "summary": "cell hashing barcodes",
    "upload_status": "validated",
    "uuid": "285d0cac-2db9-4c1c-b135-db33109a187b",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
    }
}