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IGVFFI0706LAPB

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8174BPPS(CRISPR prime editing Variant-EFFECTS targeting PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
hg19 variant effects
Analysis Step Version
/analysis-step-versions/b1581dec-2980-4a2e-8884-4e95219da4d4/
File Format
tsv
Content Type
variant effects
Aliases
jesse-engreitz:240908-S029-PPIF_5SpliceSite-IndividualVariantExp-AGGT_TCAG-THP1_Variant-EFFECTS_variant_effects_file
md5sum
db77f32908c5f12d0808a9b8c6c12069
Content MD5sum
b67c0256c9e0d834e13357a33bab9654
File Size
270 B
Submitted File Name
PPIF_5PrimeSpliceIndividual_AGGT_TCAG_AllelicEffectsStats.tsv.gz
Checkfiles Version
v20
Attribution
Jesse Engreitz, Stanford

Reference Source Details

Genome Assembly
hg19

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
explanation of columns in analysis summary file output by the Variant-EFFECTS pipeline
file format specification

Samples

21 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 76-100% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library

Files This File Derives From

304 items
fastq
reads
Jesse Engreitz, Stanford
4.4 MB
validated
fastq
reads
Jesse Engreitz, Stanford
5.2 MB
validated
fastq
reads
Jesse Engreitz, Stanford
15 MB
validated
fastq
reads
Jesse Engreitz, Stanford
11 MB
validated
fastq
reads
Jesse Engreitz, Stanford
10.0 MB
validated
fastq
reads
Jesse Engreitz, Stanford
3.3 MB
validated
fastq
reads
Jesse Engreitz, Stanford
15 MB
validated
fastq
reads
Jesse Engreitz, Stanford
18 MB
validated
fastq
reads
Jesse Engreitz, Stanford
19 MB
validated
fastq
reads
Jesse Engreitz, Stanford
31 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
variant effects
GRCh38 variant effects
Jesse Engreitz, Stanford
337 B
validated