IGVFFI0480XBYK

released

validation exempted

File Set

IGVFDS5448FWBW(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf0_peaks_10x1

md5sum

08e56e4e9aeaf1895f7de5f509c712b4

Content MD5sum

e7b53abe97ab8b1d768d3fbe64e04b43

File Size

2.5 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf0/e0l1_peaks.bed.gz

Checkfiles Version

v14

Validation Error Detail

{"validate_files": "Error [file=/home/ubuntu/igvf-files/2025/02/14/41079c9c-2a35-4ca4-9e45-edde57b43857/IGVFFI0480XBYK.bed.gz, line=302473]: chrom KI270728.1 not found [KI270728.1\t1791134\t1791968]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2682GVVD

MultiplexedSample

GM25256 (WTC-11)

multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples