IGVFFI0420XBKB

released

validated

File Set

IGVFDS9143TFRW(CRISPR interference FACS screen targeting CCR7 integrating a guide (sgRNA) library targeting transcription start sites in many genes)

Summary

custom assembly fold change over control

Analysis Step Version

/analysis-step-versions/6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2/

File Format

tsv

Content Type

fold change over control

Aliases

charles-gersbach:cd8-tcells-guide-quantifications-crispri-ccr7

md5sum

a524709086ecef977ee8f9b28cf78f93

Content MD5sum

447a3eea06a73765790066fb70692824

File Size

70 KB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/T2C_DESeq2_CRISPRi_TF_screen.simple.v2.txt.gz

Checkfiles Version

Legacy version of checkfiles

Attribution

Charles Gersbach, Duke

(

HG012053 — Charles Gersbach

)

Reference Source Details

Genome Assembly

custom

File Format Specifications

1 item

Page

Description

Type

Download

Standardized File Format

Preview

DESeq2 results

file format specification

DESeq2 results file format specification.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM1205VMNO

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell (sorting details: FACS bin for 90-100% expression of CCR7) modified with CRISPRi Sa-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM2207SJEN

PrimaryCell

CD8-positive, alpha-beta memory T cell

IGVFSM7413JCSK

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell (sorting details: FACS bin for 0-10% expression of CCR7) modified with CRISPRi Sa-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM9398LTWW

PrimaryCell

CD8-positive, alpha-beta memory T cell