IGVFFI0278DRTS

{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI0278DRTS/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0278DRTS",
    "aliases": [
        "ansuman-satpathy:igvf15_multiseq_count_matrix_10x2"
    ],
    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v16",
    "content_md5sum": "8e70078f21a7184fb4f846930059ed46",
    "content_type": "cell hashing barcodes",
    "controlled_access": false,
    "creation_timestamp": "2025-02-19T23:36:01.979806+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI0384CUYL/",
        "/sequence-files/IGVFFI0978XAEL/",
        "/sequence-files/IGVFFI6339LORA/",
        "/sequence-files/IGVFFI7931LQSS/",
        "/sequence-files/IGVFFI2619DHFX/",
        "/sequence-files/IGVFFI4028ZBYC/",
        "/sequence-files/IGVFFI7764LTSS/",
        "/sequence-files/IGVFFI7704YPUX/"
    ],
    "file_format": "tsv",
    "file_format_specifications": [
        "/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS6039JXBR/",
        "accession": "IGVFDS6039JXBR",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2174QALS/",
                "accession": "IGVFSM2174QALS",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM1624SZQN/",
                "accession": "IGVFSM1624SZQN",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM0825LHRL/",
                "accession": "IGVFSM0825LHRL",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 919184,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI0278DRTS/@@download/IGVFFI0278DRTS.tsv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "d27ee459eb6945444b5ccbff3bb7b111",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T06:05:12.321286+00:00",
    "s3_uri": "s3://igvf-files/2025/02/19/d2c1c712-8233-4857-aca3-05a54a21fe74/IGVFFI0278DRTS.tsv.gz",
    "schema_version": "13",
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e15l2_tag_mtx.tsv.gz",
    "summary": "cell hashing barcodes",
    "upload_status": "validated",
    "uuid": "d2c1c712-8233-4857-aca3-05a54a21fe74",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
    }
}