{
"@context": "/terms/",
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"File",
"Item"
],
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"aliases": [
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],
"analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
"assay_titles": [
"10x multiome with MULTI-seq"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v14",
"content_md5sum": "5031cd2abd53cca314724790f5c82e66",
"content_type": "peaks",
"controlled_access": false,
"creation_timestamp": "2025-01-28T05:59:24.873973+00:00",
"derived_from": [
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],
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"file_format_specifications": [
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"accession": "IGVFDS3232NVVG",
"file_set_type": "intermediate analysis",
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{
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"accession": "IGVFSM8276PHGD",
"classifications": [
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"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
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"multiplexed sample"
],
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{
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"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
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"differentiated cell specimen",
"multiplexed sample"
],
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"modifications": [],
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{
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"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
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"classifications": [
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"differentiated cell specimen",
"multiplexed sample"
],
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"modifications": [],
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{
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"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
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"gene_list_for": [],
"href": "/tabular-files/IGVFFI0269NGAR/@@download/IGVFFI0269NGAR.bed.gz",
"input_file_for": [],
"integrated_in": [],
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},
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"status": "released",
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"title": "Christopher Mcginnis"
},
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"summary": "GRCh38 peaks",
"upload_status": "validation exempted",
"uuid": "dcf546e4-5ae8-4dbe-b2a1-070bfaed6092",
"validation_error_detail": "{\"md5sum\": \"original md5sum 5031cd2abd53cca314724790f5c82e66 does not match newly calculated md5sum b3241e050bdb4d01a76ac91a5acb3dcd.\", \"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2025/01/28/dcf546e4-5ae8-4dbe-b2a1-070bfaed6092/IGVFFI0269NGAR.bed.gz, line=294600]: chrom KI270728.1 not found [KI270728.1\\t232280\\t233180]\\nAborting ... found error.\"}",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}