IGVFFI0224OXYI

released

validation exempted

File Set

IGVFDS3232NVVG(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

fragments

Analysis Step Version

/analysis-step-versions/4e4a3f0b-c3bc-477c-bc53-c3091bc56756/

File Format

tsv

Content Type

fragments

Aliases

ansuman-satpathy:igvf6_fragments_10x4

md5sum

8ea13dfa3981d61429ff5a3568a1c95a

Content MD5sum

f5b20dba659e9d5dff5b92835e4ddafd

File Size

6.2 GB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf6/e6l4_fragments.tsv.gz

Checkfiles Version

v14

Validation Error Detail

{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Fragment File

file format specification

header_fragment_files_from_10x_genomics_20241120.tsv

Samples

4 items

Sample Terms

Disease Terms

Summary

IGVFSM2522EBPE

MultiplexedSample

H1-hESC

multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples

MultiplexedSample

MultiplexedSample

MultiplexedSample