{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI0145YXMH/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI0145YXMH",
"aliases": [
"ansuman-satpathy:igvf12_multiseq_count_matrix_10x5"
],
"analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v16",
"content_md5sum": "718b7c580d40ea8271c81a49e61ff564",
"content_type": "cell hashing barcodes",
"controlled_access": false,
"creation_timestamp": "2025-02-19T23:34:25.270444+00:00",
"derived_from": [
"/sequence-files/IGVFFI0898VOFK/",
"/sequence-files/IGVFFI7549GEQO/",
"/sequence-files/IGVFFI4480ZNHZ/",
"/sequence-files/IGVFFI4321SLMT/",
"/sequence-files/IGVFFI9505JZEP/",
"/sequence-files/IGVFFI9712ELVE/",
"/sequence-files/IGVFFI1149XQRE/",
"/sequence-files/IGVFFI1497ITGW/",
"/sequence-files/IGVFFI5762ILVW/",
"/sequence-files/IGVFFI5684DYZN/",
"/sequence-files/IGVFFI0183RLSU/",
"/sequence-files/IGVFFI2061FVIP/",
"/sequence-files/IGVFFI4840WSPP/",
"/sequence-files/IGVFFI4095SOPA/",
"/sequence-files/IGVFFI5111HMGH/",
"/sequence-files/IGVFFI7007BFUB/",
"/sequence-files/IGVFFI3251HMSI/",
"/sequence-files/IGVFFI2579CLNY/",
"/sequence-files/IGVFFI2026RIMK/",
"/sequence-files/IGVFFI1480TLUQ/",
"/sequence-files/IGVFFI0462VFFX/",
"/sequence-files/IGVFFI5022SCSD/",
"/sequence-files/IGVFFI3878XPRD/",
"/sequence-files/IGVFFI4134SLVA/",
"/sequence-files/IGVFFI4960QSHE/",
"/sequence-files/IGVFFI4495PYAV/",
"/sequence-files/IGVFFI5873LUDQ/",
"/sequence-files/IGVFFI4743LYWF/"
],
"file_format": "tsv",
"file_format_specifications": [
"/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS7016ZFVC/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7016ZFVC",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1640UGWP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1640UGWP",
"classifications": [
"differentiated cell specimen",
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
},
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
"file_size": 247895,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI0145YXMH/@@download/IGVFFI0145YXMH.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "5b04b678332caa5e3e04d42ed922d964",
"quality_metrics": [],
"release_timestamp": "2025-03-22T00:43:37.541230+00:00",
"s3_uri": "s3://igvf-files/2025/02/19/c72fe8f2-b1c0-4c26-80a6-f756c5da91d8/IGVFFI0145YXMH.tsv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e12l5_tag_mtx.tsv.gz",
"summary": "cell hashing barcodes",
"upload_status": "validated",
"uuid": "c72fe8f2-b1c0-4c26-80a6-f756c5da91d8",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}