IGVFFI9960MMMA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8276LNUY(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G5_P023_L003_R2

md5sum

64ce0d17685d14db17a4c24f69ca9c5d

Content MD5sum

f9ac5f294a90f54794b0fe16311f4bd6

File Size

3.9 GB

Submitted File Name

Multiome_ATAC_X024_G5_L005_P023_S29_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

216497906

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3845CORI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples