IGVFFI9957AQGS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6858PKWK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X016_G7_P015_L003_R1

md5sum

f7d30acf00bb407537f2a5c6a9a1944c

Content MD5sum

8846445c00e22235098d1cd2a3391256

File Size

8.9 GB

Submitted File Name

Multiome_ATAC_X016_G7_L007_P015_S21_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

281266876

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4966DIHF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples