IGVFFI9946WEYA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4030FQTQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G1_P015_L003_R1

md5sum

2782b4bb61c544328183b7f0be2fa7ca

Content MD5sum

89b2ada907ab1f1d27cf972ac89d0b91

File Size

6.1 GB

Submitted File Name

Multiome_ATAC_X017_G1_L001_P015_S23_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

197893374

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4187QNCX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples