IGVFFI9937GHAE

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI9937GHAE/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9937GHAE",
10    "aliases": [
11        "maya-kasowski:Scale_scRNA_L8_2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "9351d3772fc4bc58963f1f544e84f336",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-07T20:23:06.404344+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS2205WNED/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS2205WNED",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM4500AYVD/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM4500AYVD",
50                "classifications": [
51                    "primary cell",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0002371/",
59                        "status": "released",
60                        "term_name": "bone marrow"
61                    }
62                ],
63                "status": "preview",
64                "summary": "multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 21 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "preview",
70        "summary": "scRNA-seq"
71    },
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73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI9937GHAE/@@download/IGVFFI9937GHAE.fastq.gz",
75    "illumina_read_type": "R2",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/maya-kasowski/",
80        "title": "Maya Kasowski, Stanford"
81    },
82    "lane": 8,
83    "loci_list_for": [],
84    "maximum_read_length": 150,
85    "md5sum": "5a4f6eafa521181fd5f79ef7cbbeffed",
86    "mean_read_length": 150,
87    "minimum_read_length": 150,
88    "quality_metrics": [],
89    "read_count": 809653945,
90    "read_names": [
91        "Read 2"
92    ],
93    "s3_uri": "s3://igvf-restricted-files/2025/03/07/f09f6627-6c25-4a88-9d14-4d28e98e8620/IGVFFI9937GHAE.fastq.gz",
94    "schema_version": "15",
95    "seqspecs": [],
96    "sequencing_kit": "NovaSeq X Series 25B Reagent Kit",
97    "sequencing_platform": {
98        "@id": "/platform-terms/EFO_0022841/",
99        "status": "released",
100        "term_name": "Illumina NovaSeq X Plus"
101    },
102    "sequencing_run": 1,
103    "status": "preview",
104    "submitted_by": {
105        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
106        "title": "Shouvik Mani"
107    },
108    "submitted_file_name": "/users/shouvikm/data/Scale/SCALE_RNA/Scale_RNA_96/usftp21.novogene.com/01.RawData/Scale_RNA_96/Scale_RNA_96_CKDL230018055-1A_225KM5LT3_L8_2.fq.gz",
109    "summary": "R2 reads from sequencing run 1",
110    "upload_status": "validated",
111    "uuid": "f09f6627-6c25-4a88-9d14-4d28e98e8620"
112}