Home

IGVFFI9936FPMA

released
validated
File Set
IGVFDS8103FALC(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x1_NGS2_r2
md5sum
d3b940d5bfe49f6b938021f017975112
Content MD5sum
5d35c3f21401b43ce8d0b57a226fc10b
File Size
2.2 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC1_S20_L008_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
132657630

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.3 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8075FHDU, IGVFFI9936FPMA, IGVFFI2982EDZQ, IGVFFI8752LXSX
Ansuman Satpathy, Stanford
1.4 KB
validated