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INDEXED
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SequenceFile
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IGVFFI9935UOGM
IGVFFI9935UOGM
released
validated
Json view
File Set
IGVFDS9445YYVB
(Parse SPLiT-seq)
Summary
reads from sequencing run 5
File Format
fastq
Content Type
reads
md5sum
5cb2f102266008331a1b4e2bfad25a45
Content MD5sum
6fe97c165bd37b229d18d85848d49526
File Size
7.2 GB
Submitted File Name
igvf_b01/nanopore/igvfb01_13H_lig-ss_5.fastq.gz
Sequencing Details
Sequencing Platform
ONT GridION X5
Sequencing Run
5
Sequencing Kit
ONT Ligation Sequencing Kit V14
Average Read Length
837
Read Count
9486651
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2294BOOU
MultiplexedSample
left cerebral cortex
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Files This File Derives From
1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI3221ZEPY
IGVFDS9445YYVB
pod5
Nanopore reads
Ali Mortazavi, UCI
103 GB
validated
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI