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IGVFFI9924ZSNL

released
validated
File Set
IGVFDS3171OFHP(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin0hrs-Rep1_S1_R2
md5sum
3b02d983cdcd5aad6ba50304e7a71189
Content MD5sum
f08877a6165c16eb00013c0e36e81436
File Size
2.8 GB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L360_S1_L001_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
1
Illumina Read Type
R2
Average Read Length
90
Read Count
50762644

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0123WFFT, IGVFFI0133FTES, IGVFFI9924ZSNL
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford