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IGVFFI9903KSHL

released
validated
File Set
IGVFDS5893VQJY(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp3_atac_10x1_NGS1_i1
md5sum
74c424c9146bf21c881383c9bc377359
Content MD5sum
0fb4064a8980ab1799cb1c325a2d9ea8
File Size
2.1 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/ATAC/FASTQ/ATAC_1-_S1_L001_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
289759488

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days; Homo sapiens (male) HepG2 cell line grown in DMEM without serum; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
3.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8805ZTIW, IGVFFI3240KMDW, IGVFFI0059KQUU, IGVFFI9903KSHL
Ansuman Satpathy, Stanford
1.4 KB
validated