IGVFFI9887DHXZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9821UHEX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X028_G1_P027_L003_R3

md5sum

5f7d11a84b4ce8e620eeb21846cc4649

Content MD5sum

ea7ccd2e2ad17a077162fdf39a9348dc

File Size

6.7 GB

Submitted File Name

Multiome_ATAC_X028_G1_L001_P027_S18_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

210331214

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6259JSXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples