IGVFFI9857JFRM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9428HJNK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G4_P029_L001_I1

md5sum

1cd9fe29a5d0da6f816a3a319ad7e855

Content MD5sum

6e67b1a7b90f162dcf3c7541dcdc0173

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_X029_G4_L004_P029_S2_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

263641286

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8186WTLH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples