IGVFFI9818ZLMO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2336BWET(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G8_P033_L001_R1

md5sum

2eb2c759ef853e7ef2f9a94d9391db26

Content MD5sum

c0ad28912c9d4b2414a2ff5ab57a6635

File Size

8.9 GB

Submitted File Name

Multiome_ATAC_X032_G8_L008_P033_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

165504811

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8574LYFF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples