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IGVFFI9814XYUH

released
validated
File Set
IGVFDS9866LFTQ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 3831
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:SS-LS_3831_R2
md5sum
3fd2523767e814a5dd1f1a9073e9ecb3
Content MD5sum
dae4dcafe1081b7808191d77567f6554
File Size
938 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-1535_L2_SS-PKR-434_2022-APRIL-R1-SET-OF-192_R2.fastq.gz
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
3831
Flowcell ID
H22KKDRX5
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
199
Read Count
11797501

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
976 MB
validated
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
5.5 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0834RTNI, IGVFFI9814XYUH
Jason Buenrostro, Broad
1.3 KB
validated