IGVFFI9814QWUU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0180AWWR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X013_G8_P011_L003_R1

md5sum

31d2fdd8020436485601968166022d47

Content MD5sum

857a1ff818a53e1a0e12d026701c691a

File Size

6.2 GB

Submitted File Name

Multiome_ATAC_X013_G8_L008_P011_S26_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

194062168

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5169WCIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples