IGVFFI9781DBBI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2114QIIW(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G7_P023_L003_R2

md5sum

d47ca832453b31a34fc3a93ba7d004c4

Content MD5sum

269729a9a59e27a35b9840e15f6c32f3

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X024_G7_L007_P023_S31_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

255311989

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1883EATC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples