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IGVFFI9779AEQR

released
validated
File Set
IGVFDS5111SPGA(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp2_rna_10x1_NGS2_i2
md5sum
3200a9c27b0a5108d3f78147d9e71bab
Content MD5sum
e5b2856ba3b3711b3f17e7b28f964cc4
File Size
1.7 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF2_McGinnis/GEX/FASTQ/GEX_3_S43_L008_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
337686215

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
184 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3571TKGA, IGVFFI3018VEYP, IGVFFI9779AEQR, IGVFFI5522YJDZ
Ansuman Satpathy, Stanford
1.4 KB
validated