IGVFFI9778ISFP

released
validated
File Set
IGVFDS6896VSKX(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S4_I1
md5sum
bb096a1ef1dc16c882478316598da06c
Content MD5sum
b06c0785466c586c8b22c19edf2bc818
File Size
344 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L362_S3_L004_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
4
Illumina Read Type
I1
Average Read Length
8
Read Count
50652888

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4606KWZQ, IGVFFI9778ISFP, IGVFFI9026YNOD
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution