{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI9773SEVN/",
"@type": [
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"File",
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],
"accession": "IGVFFI9773SEVN",
"aliases": [
"charles-gersbach:cd8-tcells-rna-seq-chronic-activation-gfp-rep3-fastq-R1"
],
"assay_titles": [
"RNA-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_md5sum": "f7acc2e76298c4c24161806ae8a49163",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-11-08T21:13:24.096564+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS4808GJDM/",
"accession": "IGVFDS4808GJDM",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/primary-cells/IGVFSM4633QTQY/",
"accession": "IGVFSM4633QTQY",
"classifications": [
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],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000909/",
"status": "released",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "RNA-seq integrating a control transduction expression vector library"
},
"file_size": 1754299075,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI9773SEVN/@@download/IGVFFI9773SEVN.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [
"/alignment-files/IGVFFI3680NTHN/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"lane": 1,
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "ed1f1ce8429139caa0f29ae637a359a5",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 23128823,
"release_timestamp": "2024-10-29T17:38:49.912763+00:00",
"s3_uri": "s3://igvf-files/2023/11/08/cd7d9329-4a8d-4eef-8887-9c013508123a/IGVFFI9773SEVN.fastq.gz",
"schema_version": "14",
"seqspecs": [],
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"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
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"status": "released",
"submitted_by": {
"@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
"title": "Alejandro Barrera"
},
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_2_T_cell_project_1/pSM7-IL-2-D3_R1_001.fastq.gz",
"submitter_comment": "Libraries prepared and sequenced by Genewiz. Unknown sequencing platform (best guess annotated)",
"summary": "R1 reads from sequencing run 3",
"upload_status": "validated",
"uuid": "cd7d9329-4a8d-4eef-8887-9c013508123a"
}