IGVFFI9759BYEB

released

validated

File Set

IGVFDS1422AHLC(CRISPR interference FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

guillaume-lettre:BP_screen_KRAB_R_R2_1_read2

md5sum

930347110018943bedad70e0884fceb3

Content MD5sum

323129f0699186695561762e8f2a3ba6

File Size

314 MB

Submitted File Name

/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/CRISPR_IGVF_20230720/samples/NS.X0085.005.IndexR1_15.1BPR2_R_R2.fastq.gz

Checkfiles Version

Legacy version of checkfiles

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Sequencing Kit

NovaSeq 6000 SP Reagent Kit v1.5

Illumina Read Type

Average Read Length

151

Read Count

5403642

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1322POFE

InVitroSystem

TeloHAEC

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library