IGVFFI9756GTCW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2090MMXQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G2_P009_L001_R3

md5sum

8c1ca1bbdb57b9eb73b0fd0dd2b13f36

Content MD5sum

8d73f468f7068bf857b4cdd438988fb9

File Size

8.8 GB

Submitted File Name

Multiome_ATAC_X012_G2_L002_P009_S12_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

271505864

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7828IXBW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples