IGVFFI9717ZHUD

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI9717ZHUD/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9717ZHUD",
    "aliases": [
        "jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-Jurkat-PE2_Exp1_NegControl-PCRrep2_R1"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released sequence file [IGVFFI9717ZHUD](/sequence-files/IGVFFI9717ZHUD/) has in progress subobject auxiliary set [IGVFDS3868MFLT](/auxiliary-sets/IGVFDS3868MFLT/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/sequence-files/IGVFFI9717ZHUD/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "fba7bb75ee6b8b1b6aef649290d474a1",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-05T18:52:20.780015+00:00",
    "file_format": "fastq",
    "file_set": "/auxiliary-sets/IGVFDS3868MFLT/",
    "file_size": 7455781,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI9717ZHUD/@@download/IGVFFI9717ZHUD.fastq.gz",
    "illumina_read_type": "R1",
    "index": "TTGTCTAT:ACTG",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "loci_list_for": [],
    "maximum_read_length": 150,
    "md5sum": "0e69c5005331fc690d0d5d5dd2befef3",
    "mean_read_length": 150,
    "minimum_read_length": 150,
    "read_count": 392436,
    "release_timestamp": "2023-12-20T23:12:58.603672+00:00",
    "s3_uri": "s3://igvf-files/2023/12/05/a93f2468-8d94-4a48-a062-578f56dc125b/IGVFFI9717ZHUD.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_platform": "/platform-terms/EFO_0008566/",
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
        "title": "Michael Montgomery"
    },
    "submitted_file_name": "220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-NA-Amp_pPPIF_S1-BioRep1-FFRep1-BinNeg-PCRrep2_S226_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "a93f2468-8d94-4a48-a062-578f56dc125b"
}