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INDEXED
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SequenceFile
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IGVFFI9700OSNI
IGVFFI9700OSNI
released
validated
Json view
File Set
IGVFDS4493CHDR
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp13_atac_10x2_NGS3_r1
md5sum
65085fe0e0c40352cc4d57813d758dd8
Content MD5sum
c704c67fb8b931c28468751d48f4e1ed
File Size
9.4 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/tq_fastqs/ATAC/igvf13_s2_atac_S2_L003_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22JL3GLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
311010025
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7106DAZZ
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9484EEZH
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.2 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5277KTGH
yaml
seqspec
seqspec of IGVFFI5887WXJN, IGVFFI9700OSNI, IGVFFI7961ZCVK, IGVFFI8562KVTJ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford