IGVFFI9654OFFE

released

validated

File Set

IGVFDS1575SRMY(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin0hrs-FF4-BinE-PCR2_S47

md5sum

f65faa78fee59dabd26142c848bb2da7

Content MD5sum

a60979d3c5e70e3e02d1adf12262bafa

File Size

6.8 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin0hrs-FF4-BinE-PCR2_S47_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

GAACCTAG:CTCT

Average Read Length

Read Count

279384

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM3377SBLH

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library