IGVFFI9654DANY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1365RKUP(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X016_G4_P015_L003_R2

md5sum

b6bf1d6065f71ae8fa5a254084011562

Content MD5sum

df8b125cd47cff2d4740ff4cb6170ab9

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X016_G4_L004_P015_S18_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

185352724

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1455JWDF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples