Home

IGVFFI9642SDGR

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0307GWPA(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
I2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW276_8_I2
md5sum
7d5df5edb5e0aa39a905cfe9c99c5caf
Content MD5sum
1bf9d9301c7d87ed915389939a22672b
File Size
851 MB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-10-25-McDermott-NovaSeq.lane8.10X/10X//LW276_S8_L008_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
2
Flowcell ID
22FJH2LT3
Lane
8
Illumina Read Type
I2
Average Read Length
10
Read Count
148637964

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW276), female, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
425 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
789 MB
validated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT