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IGVFFI9638ECFN

released
validated
File Set
IGVFDS6411MOAB(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp11_rna_10x1_NGS2_r1
md5sum
1b4a8099e17e3e3facee031ee2b304d4
Content MD5sum
99647c7eebbed2067106033536217afd
File Size
38 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240424_IGVF11_McGinnis/GEX/FASTQ/GEX_1_S22_L004_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
HGVFMDSX7
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
101
Read Count
572084498

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
214 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1760KKPN, IGVFFI9638ECFN, IGVFFI1819GUUE, IGVFFI9450INCG
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford