IGVFFI9634WQIF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3166POHS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G2_P023_L003_I1

md5sum

094612c346b3050dc2f1960f147d83e4

Content MD5sum

bfe51a236218ab205dcfb29cd2a8a252

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X025_G2_L002_P023_S34_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

165164926

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2452FKKK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples