Home

IGVFFI9611UAWB

released
validated
File Set
IGVFDS8528TQHC(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 261
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2104_R1
bradley-bernstein:SS-LS_261_R1
buenrostro-bernstein:SS-LS_2104_R1
buenrostro-bernstein:SS-LS_261_R1
md5sum
7ac539fa90d596f3bef04fe2e4f6ec25
Content MD5sum
4f5dcb98838f1fed77f26b50fffd4a92
File Size
438 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-186_L2_SS-PKR-131_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
261
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
14890770

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
6.3 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
887 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9611UAWB, IGVFFI3550CIIB
Jason Buenrostro, Broad
1.2 KB
validated