IGVFFI9609EDQD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8643IYIV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X014_G4_P013_L001_R1

md5sum

e359256d92b32421481b249bd3f6d1fb

Content MD5sum

726b5163b6c8bad64a0a72ba9f4e788f

File Size

7.5 GB

Submitted File Name

Multiome_ATAC_X014_G4_L004_P013_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

239332969

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3399SGBD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples