IGVFFI9575XKJG

released

validated

File Set

IGVFDS2084ZSSG(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin6hrs-FF1-BinF-PCR3-Rep1_S288

md5sum

9354608d17a1a9b993763e5c1f5ee3f1

Content MD5sum

f00d68c0fdade5f029f8352266fc45d7

File Size

29 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin6hrs-FF1-BinF-PCR3-Rep1_S288_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CAATAGTC:GCCA

Average Read Length

Read Count

1344312

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7718ZYYQ

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of CCND1) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library