IGVFFI9569OPXA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2559EFEW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G2_P075_L004_R1

md5sum

f3e3cb0d7c3721ca774158a1cdc50527

Content MD5sum

68aa99a55a7b1744f4bf77b1c82c2236

File Size

8.5 GB

Submitted File Name

Multiome_ATAC_RP028_G2_L002_P075_S34_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

117867476

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1273LHSM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples