IGVFFI9564AZGU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2128ATAI(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G2_P071_L006_R2

md5sum

3d267b0304d6b8f95feb9c4f29068748

Content MD5sum

fee46ea42fc2d3b2e958b9f428953ee8

File Size

3.0 GB

Submitted File Name

Multiome_ATAC_X053_G2_L002_P071_S46_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

173580600

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6916RHHD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples