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IGVFFI9556FZRR

released
validated
File Set
IGVFDS2437JWUW(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp18_multi_10x3_NGS1_i1
md5sum
b2543b0414e0d57c1be8bc4bd2d3b9a9
Content MD5sum
92e1dc0cea65775bdd3e33e67c186a52
File Size
36 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf18/MULTI/IGVF18_MULTI3-CMAS24_S58_L004_I1_001.fastq.gz
Checkfiles Version
v14

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22JL3JLT4
Lane
1
Sequencing Kit
NovaSeq X Series 25B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
3949264

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
584 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7115JMRC, IGVFFI4959ADMS, IGVFFI9556FZRR
Ansuman Satpathy, Stanford
1.3 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford