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IGVFFI9550CRCV

released
validated
File Set
IGVFDS3910GBDQ(interference single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp10_atac_10x1_NGS2_i1
md5sum
e47e3fc9c4c3ef40ab4d41c7676728b0
Content MD5sum
d0cee86fcc14a00ba0d572fc0ed7b3b1
File Size
3.5 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF10_McGinnis/ATAC/FASTQ/ATAC_1_S130_L008_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JKJLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
585882528

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
7.8 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9550CRCV, IGVFFI8243RHWY, IGVFFI0859TDIG, IGVFFI5047YIPF
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford