IGVFFI9536BNPY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2136YVPM(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X015_G8_P014_L002_R1

md5sum

84d3e11d3c795c3dda65059d7fe874b8

Content MD5sum

e2724aa341570a5b4c1a589867eba969

File Size

461 MB

Submitted File Name

Multiome_RNA_X015_G8_L008_P014_S28_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

20979214

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9878TZLL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples